Azenta
AZTA
#5927
Rank
$1.04 B
Marketcap
$22.59
Share price
-0.18%
Change (1 day)
-22.37%
Change (1 year)

Azenta - 10-Q quarterly report FY


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1
UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

FORM 10-Q

(Mark One)
[X] Quarterly Report Pursuant to Section 13 or 15(d) of the Securities
Exchange Act of 1934

For the quarterly period ended: June 30, 2001

OR

[ ] Transition Report Pursuant to Section 13 or 15(d) of the Securities
Exchange Act of 1934

For the transition period from _______ to _______


Commission File Number 0-25434
-------

BROOKS AUTOMATION, INC.
(Exact name of registrant as specified in its charter)

Delaware 04-3040660
---------- ----------
(State or other jurisdiction of (I.R.S. Employer
incorporation or organization) Identification No.)

15 Elizabeth Drive

Chelmsford, Massachusetts
(Address of principal executive offices)

01824

(Zip Code)

Registrant's telephone number, including area code: (978) 262-2400

---------------------------------------------

Indicate by check mark whether the registrant: (1) has filed all reports
required to be filed by Section 13 or 15(d) of the Securities Exchange Act of
1934 during the preceding 12 months (or for such shorter period that the
registrant was required to file such reports), and (2) has been subject to such
filing requirements for the past 90 days.

Yes X No
--- ---

Indicate the number of shares outstanding of each of the registrant's classes of
common stock, as of the latest practical date (June 30, 2001):

Common stock, $0.01 par value 18,111,285 shares
2

BROOKS AUTOMATION, INC.

INDEX

<TABLE>
<CAPTION>

PAGE NUMBER
--------------
<S> <C>
PART I. FINANCIAL INFORMATION

Item 1. Consolidated Financial Statements

Consolidated Balance Sheets as of June 30, 2001 (unaudited) and
September 30, 2000 3

Consolidated Statements of Operations for the three and nine
months ended June 30, 2001 and 2000 (unaudited) 4

Consolidated Statements of Cash Flows for the nine months
ended June 30, 2001 and 2000 (unaudited) 5

Notes to Consolidated Financial Statements (unaudited) 6

Item 2. Management's Discussion and Analysis of Financial Condition and
Results of Operations 16

Item 3. Quantitative and Qualitative Disclosures about Market Risk 35

PART II. OTHER INFORMATION

Item 6. Exhibits and Reports on Form 8-K 36

Signatures 37

</TABLE>
3

BROOKS AUTOMATION, INC.
CONSOLIDATED BALANCE SHEETS

(In thousands, except share data)

<TABLE>
<CAPTION>

June 30, September 30,
2001 2000
--------------- ----------------
(unaudited)
<S> <C> <C>
Assets
Current assets
Cash and cash equivalents $ 194,839 $ 131,203
Marketable securities 24,714 88,034
Accounts receivable, net, including related party receivables of $265 and
$6,820 at June 30, 2001 and September 30, 2000, respectively (See Note 6) 113,007 92,779
Inventories 65,107 56,975
Prepaid expenses and other current assets 12,172 8,441
Deferred income taxes 18,861 17,952
------------ ------------
Total current assets 428,700 395,384

Property, plant and equipment
Buildings and land 31,389 1,573
Computer equipment and software 35,134 23,525
Machinery and equipment 16,177 19,958
Furniture and fixtures 10,009 6,665
Leasehold improvements 9,561 9,169
Construction in progress 5,872 491
------------ ------------
108,142 61,381
Less: Accumulated depreciation and amortization (48,015) (36,482)
------------ ------------
Net property, plant and equipment 60,127 24,899
Intangible assets, net 109,622 60,263
Long-term marketable securities 111,717 15,000
Deferred income taxes 18,525 13,361
Other assets 6,047 4,221
------------ ------------
Total assets $ 734,738 $ 513,128
============ ============

Liabilities, Minority Interests and Stockholders' Equity
Current liabilities
Notes payable $ 16,912 $ 16,000
Current portion of long-term debt and capital lease obligations 478 519
Accounts payable 16,487 20,874
Deferred revenue 18,935 17,018
Accrued compensation and benefits 15,763 14,407
Accrued acquisition-related and restructuring costs 401 538
Accrued income taxes payable 18,015 9,188
Accrued expenses and other current liabilities 20,500 13,760
------------ ------------
Total current liabilities 107,491 92,304

Convertible subordinated notes 175,000 --
Long-term debt and capital lease obligations 35 282
Deferred income taxes 4,636 5,064
Other long-term liabilities 646 438
------------ ------------
Total liabilities 287,808 98,088
------------ ------------
Contingencies (See Note 10)

Minority interests 924 1,186
------------ ------------

Stockholders' equity
Preferred stock, $0.01 par value, 1,000,000 shares authorized, none
issued and outstanding -- --
Common stock, $0.01 par value, 43,000,000 shares authorized, 18,111,285
and 17,218,484 shares issued and outstanding, respectively 181 172
Additional paid-in capital 465,879 433,101
Deferred compensation (12) (35)
Accumulated other comprehensive loss (6,180) (2,942)
Accumulated deficit (13,862) (16,442)
------------ ------------
Total stockholders' equity 446,006 413,854
------------ ------------
Total liabilities, minority interests and stockholders' equity $ 734,738 $ 513,128
============ ============

</TABLE>

The accompanying notes are an integral part of these
consolidated financial statements.
4

BROOKS AUTOMATION, INC.
CONSOLIDATED STATEMENTS OF OPERATIONS
(unaudited)

(In thousands, except per share data)

<TABLE>
<CAPTION>

Three months ended Nine months ended
June 30, June 30,
-------------------------- ----------------------------
2001 2000 2001 2000
----------- ---------- ----------- ------------
<S> <C> <C> <C> <C>
Revenues
Product, including related party revenues of $13,934 for
the period from October 1, 2000 through January 23,
2001, and $9,926 and $25,453 for the three and nine
month periods ended June 30, 2000, respectively
(See Note 6) $ 72,178 $ 71,487 $ 243,624 $ 184,423
Services 21,589 16,340 66,461 37,357
--------- --------- --------- ---------
Total revenues 93,767 87,827 310,085 221,780
--------- --------- --------- ---------
Cost of revenues
Product 36,566 37,361 124,829 96,397
Services 14,179 10,551 47,443 22,990
--------- --------- --------- ---------
Total cost of revenues 50,745 47,912 172,272 119,387
--------- --------- --------- ---------
Gross profit 43,022 39,915 137,813 102,393
--------- --------- --------- ---------
Operating expenses
Research and development 16,253 11,326 44,605 29,426
Selling, general and administrative 22,472 18,656 66,797 47,952
Amortization of acquired intangible assets 7,844 4,907 20,479 10,614
Acquisition-related charges 699 677 1,717 677
--------- --------- --------- ---------
Total operating expenses 47,268 35,566 133,598 88,669
--------- --------- --------- ---------
Income (loss) from operations (4,246) 4,349 4,215 13,724
Interest income 2,975 3,797 9,124 5,479
Interest expense 1,040 319 1,333 1,112
Other income (expense) 163 (125) (451) (135)
--------- --------- --------- ---------

Income (loss) before income taxes and minority interests (2,148) 7,702 11,555 17,956
Income tax provision (benefit) (2,342) 5,357 9,237 10,842
--------- --------- --------- ---------
Income before minority interests 194 2,345 2,318 7,114
Minority interests in loss of consolidated subsidiary (110) (141) (262) (249)
--------- --------- --------- ---------
Net income $ 304 $ 2,486 $ 2,580 $ 7,363
========= ========= ========= =========

Earnings per share
Basic $ 0.02 $ 0.15 $ 0.15 $ 0.51
Diluted $ 0.02 $ 0.14 $ 0.14 $ 0.47

Shares used in computing earnings per share
Basic 17,518 16,934 17,358 14,568
Diluted 18,584 18,269 18,089 15,681

</TABLE>

The accompanying notes are an integral part of these
consolidated financial statements.
5

BROOKS AUTOMATION, INC.
CONSOLIDATED STATEMENTS OF CASH FLOWS
(unaudited)

(In thousands)

<TABLE>
<CAPTION>

Nine months ended
June 30,
---------------------------
2001 2000
---------- -----------
<S> <C> <C>
Cash flows from operating activities
Net income $ 2,580 $ 7,363
Adjustments to reconcile net income to net cash used in operating
activities:
Depreciation and amortization 31,413 18,338
Compensation expense related to common stock options 23 23
Deferred income taxes (8,700) 851
Amortization of debt discount 4 --
Minority interests (262) (249)
(Gain) loss on disposal of long-lived assets 75 (61)
Changes in operating assets and liabilities:
Accounts receivable (12,880) (38,939)
Inventories (7,263) (18,712)
Prepaid expenses and other current assets (3,386) (4,509)
Accounts payable (5,077) 10,976
Deferred revenue (631) 6,442
Accrued acquisition-related and restructuring costs (137) (512)
Accrued expenses and other current liabilities 14,307 1,304
--------- ---------
Net cash provided by (used in) operating activities 10,066 (17,685)
--------- ---------

Cash flows from investing activities
Purchases of property, plant and equipment (43,244) (10,597)
Purchase of businesses, net of cash acquired (32,131) (24,661)
Purchase of marketable securities (133,655) --
Sale of marketable securities 100,258 --
Proceeds from sale of long-lived assets 8 430
Decrease in other assets 2,167 116
--------- ---------
Net cash used in investing activities (106,597) (34,712)
--------- ---------
Cash flows from financing activities
Net decrease in short-term borrowings (16,000) --
Net repayments of borrowings under lines of credit -- (5,263)
Proceeds from issuance of convertible subordinated notes, net of
issuance costs 169,543 --
Payments of long-term debt and capital lease obligations (390) (371)
Proceeds from issuance of common stock, net of issuance costs 7,276 224,858
--------- ---------
Net cash provided by financing activities 160,429 219,224
--------- ---------
Elimination of net cash activities of Irvine Optical for the
three months ended December 31, 1999 -- 14
--------- ---------
Effects of exchange rate changes on cash and cash
equivalents (262) 56
--------- ---------
Net increase in cash and cash equivalents 63,636 166,897
Cash and cash equivalents, beginning of period 131,203 66,366
--------- ---------
Cash and cash equivalents, end of period $ 194,839 $ 233,263
========= =========

</TABLE>

The accompanying notes are an integral part of these
consolidated financial statements.
6

BROOKS AUTOMATION, INC.
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (unaudited)


1. BASIS OF PRESENTATION

The unaudited consolidated financial statements of Brooks Automation, Inc.
and its subsidiaries ("Brooks" or the "Company") included herein have been
prepared in accordance with generally accepted accounting principles. In
the opinion of management, all material adjustments which are of a normal
and recurring nature necessary for a fair presentation of the results for
the periods presented have been reflected.

The accompanying financial information should be read in conjunction with
the consolidated financial statements and notes thereto contained in the
Company's Annual Report on Form 10-K, filed with the United States
Securities and Exchange Commission for the year ended September 30, 2000.

On June 26, 2001, the Company completed the purchase of KLA-Tencor, Inc.'s
e-Diagnostics product line infrastructure ("e-Diagnostics"). The
e-Diagnostics programs enable service and support teams to remotely access
their tools in customer fabs in real-time to diagnose and resolve problems
quickly and cost-effectively. On June 25, 2001, the Company acquired CCS
Technology, Inc. ("CCST"), a supplier of 300mm automation test and
certification software located in Williston, Vermont. These transactions
were recorded using the purchase method of accounting in accordance with
Accounting Principles Board Opinion No. 16, "Business Combinations" ("APB
16"). The results of operations for the e-Diagnostics product line and CCST
for the periods from their respective acquisitions to June 30, 2001 are not
material to the consolidated results of the Company.

On May 15, 2001, Brooks acquired SimCon N.V. ("SimCon"), a value-added
reseller for the Company's simulation, scheduling, production analysis and
dispatching software headquartered in Belgium. On February 16, 2001, the
Company acquired SEMY Engineering, Inc. ("SEMY"), a provider of advanced
process and equipment control systems for the semiconductor industry
located in Phoenix, Arizona. On December 13, 2000, the Company acquired
substantially all of the assets of a scheduling and simulation software and
services distributor in Japan. These transactions were recorded using the
purchase method of accounting in accordance with APB 16. Accordingly, the
Company's Consolidated Statements of Operations for the three and nine
months ended June 30, 2001 and Consolidated Statement of Cash Flows for the
nine months ended June 30, 2001, include the results of these acquired
entities for the periods subsequent to their respective acquisitions.

The Company made several acquisitions during fiscal year 2000 which were
accounted for using the purchase method of accounting in accordance with
APB 16: MiTeX Solutions ("MiTeX") on June 23, 2000 and Auto-Soft
Corporation ("ASC") and AutoSimulations, Inc. ("ASI") on January 6, 2000.
The Company's Consolidated Statements of Operations and of Cash Flows
include the results of these entities for the periods subsequent to their
respective acquisitions.
7

BROOKS AUTOMATION, INC.
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (unaudited) - Continued


Certain amounts in previously issued financial statements have been
reclassified to conform to current presentation.

In July 2001, the Financial Accounting Standards Board issued Statements of
Financial Accounting Standards No. 141 ("FAS 141"), "Business Combinations"
and No. 142 ("FAS 142"), "Goodwill and Other Intangible Assets" effective
for fiscal years beginning after December 15, 2001. FAS 141 requires
business combinations initiated after June 30, 2001 to be accounted for
using the purchase method of accounting, and broadens the criteria for
recording intangible assets separate from goodwill. FAS 142 requires that
goodwill and identifiable intangible assets determined to have an
indefinite life no longer be amortized, but instead be tested for
impairment at least annually. The Company is required to adopt FAS 142 in
the fiscal year beginning October 1, 2002, at which time amortization of
goodwill will cease. The Company is currently assessing the impact of FAS
142 on its financial position and results of operations.

In December 1999, the U.S. Securities and Exchange Commission ("SEC")
issued Staff Accounting Bulletin No. 101 ("SAB 101"), "Revenue Recognition
in Financial Statements". SAB 101 summarizes the SEC's views in applying
generally accepted accounting principles to selected revenue recognition
issues in financial statements. In June 2000, the SEC issued Staff
Accounting Bulletin No. 101B, an amendment to SAB 101, which delays the
implementation of SAB 101. The application of the guidance in SAB 101 will
now be required in the Company's fourth quarter of fiscal 2001. The Company
does not anticipate the adoption of SAB 101 to have a significant impact on
financial results in the current fiscal year.

2. BUSINESS ACQUISITIONS

On June 26, 2001, the Company completed the purchase of KLA-Tencor, Inc.'s
("KLA-Tencor") e-Diagnostics product line infrastructure. The e-Diagnostics
programs enable service and support teams to remotely access their tools in
customer fabs in real-time to diagnose and resolve problems quickly and
cost-effectively. The acquisition was recorded using the purchase method of
accounting in accordance with APB 16. In consideration, the Company issued
331,153 shares of Brooks common stock with a market value of $16.0 million
at the time of issuance, and issued a $17.0 million one-year, interest-free
note payable to the selling stockholders. The note is payable in cash or
common stock, or any combination thereof, at the Company's discretion. The
Company has discounted the note payable using an imputed interest rate of
4.75%, to $16.2 million, for accounting purposes and is amortizing the
resulting discount to interest expense through the note's maturity date.
There is also the potential for additional purchase consideration (an
"earnout") of up to $8.0 million in the aggregate over the next three
years, contingent upon meeting certain performance objectives. The earnout
will be recorded as an addition to the purchase price at the time it
becomes probable that a payment will be required and the amount can be
reasonably estimated. In addition, there is also the potential for royalty
payments by the Company to KLA-Tencor over the next four years, contingent
upon meeting certain revenue levels. The royalties will be recorded as
costs of sales at the time it becomes probable that a payment will be
required and the amount can be reasonably estimated. The earnout and
royalties are payable in cash or Brooks common stock, or any combination
thereof, at the Company's discretion. The excess of purchase price over net
assets acquired of $33.8 million has been recorded as goodwill, based on a
preliminary purchase price allocation. Finalization of the allocation of
the purchase price to tangible and identifiable intangible assets acquired
will be made after the completion of analyses of their fair values. The
Company anticipates that the weighted average useful life of the acquired
intangible assets will be three years. The assets are being amortized using
the straight-line method. Pro forma results of operations are not presented
as the amounts are immaterial compared to the Company's historical results
due to the recent commercialization of the technology.
8

BROOKS AUTOMATION, INC.
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (unaudited) - Continued


On June 25, 2001, the Company acquired CCST, a supplier of 300mm automation
test and certification software located in Williston, Vermont. The
acquisition was recorded using the purchase method of accounting in
accordance with APB 16. In consideration, the Company paid $1.2 million of
cash and issued 78,475 shares of Brooks common stock with a market value of
$4.0 million at the time of issuance. The preliminary estimate of excess of
purchase price over net assets acquired of $5.1 million has been recorded
as goodwill and will be amortized over three years using the straight-line
method. Pro forma results of operations are not presented for the CCST
acquisition as the amounts are immaterial compared to the Company's
historical results.

On May 15, 2001, Brooks acquired SimCon, a privately-held value-added
reseller for the Company's simulation, scheduling, production analysis and
dispatching software, headquartered in Belgium. The acquisition was
recorded using the purchase method of accounting in accordance with APB 16.
In consideration, the Company paid $1.1 million of cash, issued 13,741
shares of Brooks common stock with a market value of $750,000 at the time
of issuance and provided for additional purchase consideration (an
"earnout") of up to $900,000 in the aggregate through September 2002,
contingent upon meeting certain performance objectives. The earnout will be
recorded as an addition to purchase price at the time it becomes probable
that a payment will be required and the amount can be reasonably estimated.
In addition, the Company issued an interest-free note payable to the
selling stockholders for shares of Brooks common stock with a market value
of $750,000, due one year from the transaction closing date. The Company
has discounted the note payable at 4.75%, to $714,375, for accounting
purposes and is amortizing the resulting discount to interest expense
through the note's maturity date. The number of shares to be issued will be
based upon the market value of the Company's common stock at the time of
maturity. The preliminary estimate of excess of purchase price over net
assets acquired of $2.1 million has been recorded as goodwill and will be
amortized over three years using the straight-line method. Pro forma
results of operations are not presented for the SimCon acquisition as the
amounts are immaterial compared to the Company's historical results.

On February 16, 2001, the Company acquired SEMY, a wholly owned subsidiary
of Semitool, Inc. SEMY, located in Phoenix, Arizona, is a provider of
advanced process and equipment control systems for the semiconductor
industry. In consideration, the Company paid $36.0 million cash and issued
73,243 shares of Brooks common stock with a value of $2.7 million. The
transaction was recorded using the purchase method of accounting in
accordance with APB 16. The excess of purchase price over net assets
acquired of $33.3 million has been recorded as goodwill based on a
preliminary purchase price allocation. Finalization of the allocation of
the purchase price to tangible and identifiable intangible assets acquired
will be made after the completion of analyses of their fair values. The
Company anticipates that the weighted average useful life of the acquired
intangible assets will be three years. The assets are being amortized using
the straight-line method.

The following pro forma results of operations have been prepared as though
the acquisition had occurred as of the beginning of the fiscal year prior
to the acquisition. As the results of SEMY are included fully in the
Company's operations for the three months ended June 30, 2001, these
results are presented for comparative purposes only. This pro forma
financial information does not purport to be indicative of the results of
operations that would have been attained had the acquisition been made as
9

BROOKS AUTOMATION, INC.
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (unaudited) - Continued


of that date or of results of operations that may occur in the future (in
thousands except per share data):

<TABLE>
<CAPTION>

Three months ended Nine months ended
June 30, June 30,
-------------------------- ---------------------------
2001 2000 2001 2000
(Actual) (Pro forma) (Pro forma) (Pro forma)
-------- ----------- ----------- -----------
<S> <C> <C> <C> <C>
Revenues $ 93,767 $ 92,858 $ 318,006 $ 234,578
Net income $ 304 $ 1,092 $ 400 $ 2,565
Earnings per share (diluted) $ 0.02 $ 0.06 $ 0.02 $ 0.16
</TABLE>

On December 13, 2000, the Company acquired substantially all of the assets
of the business unit which acts as a distributor for ASI's software
products ("ASI-Japan"), from Daifuku Co., Ltd. of Japan ("Daifuku"). The
Company had acquired ASI from Daifuku America Corporation ("Daifuku
America"), a U.S. subsidiary of Daifuku, on January 6, 2000. Upon its
acquisition ASI-Japan was integrated into the Company's subsidiary in
Japan. The ASI-Japan business unit provides direct sales and support for
ASI's integrated factory automation solutions to simulation and scheduling
customers in Japan. In consideration, the Company paid $1.1 million cash.
The transaction was recorded using the purchase method of accounting in
accordance with APB 16. The excess of purchase price over net assets
acquired of $1.0 million was recorded as goodwill and is being amortized
over three years using the straight-line method. Pro forma results of
operations are not presented for the ASI-Japan acquisition as the amounts
do are immaterial compared to the Company's historical results.

The Company received an aggregate of $6.0 million in cash payments as
settlements for shortfalls in the net asset values acquired relative to two
recent acquisitions. As a result, the Company recorded reductions of $5.1
million and $0.9 million to acquired intangible assets in the three months
ended March 31, 2001 and December 31, 2000, respectively.
10

BROOKS AUTOMATION, INC.
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (unaudited) - Continued


3. EARNINGS PER SHARE

Below is a reconciliation of earnings per share and weighted average common
shares outstanding for purposes of calculating basic and diluted earnings
per share (in thousands, except per share data):

<TABLE>
<CAPTION>

Three months ended Nine months ended
June 30, June 30,
------------------------------- ------------------------------
2001 2000 2001 2000
---------------- -------------- --------------- --------------
<S> <C> <C> <C> <C>
Basic earnings per share:
Net income $ 304 $ 2,486 $ 2,580 $ 7,363
-------- ------- ------- -------
Weighted average common shares outstanding 17,518 16,934 17,358 14,568
-------- ------- ------- -------
Basic earnings per share $ 0.02 $ 0.15 $ 0.15 $ 0.51
-------- ------- ------- -------
Diluted earnings per share:
Net income $ 304 $ 2,486 $ 2,580 $ 7,363
After-tax equivalent of interest expense on
notes payable 2 -- 2 --
-------- ------- ------- -------
Income for purposes of computing diluted
earnings per share $ 306 $ 2,486 $ 2,582 $ 7,363
-------- ------- ------- -------
Weighted average common shares outstanding 17,518 16,934 17,358 14,568
Dilutive stock options and warrants 1,036 1,335 721 1,113
Weighted average assumed conversion of notes
payable 30 -- 10 --
-------- ------- ------- -------
Weighted average common shares outstanding for
purposes of computing diluted earnings per
share 18,584 18,269 18,089 15,681
======== ======= ======= =======
Diluted earnings per share $ 0.02 $ 0.14 $ 0.14 $ 0.47
======== ======= ======= =======

</TABLE>

Options to purchase and assumed conversions totaling approximately
2,492,000 and 2,221,000 shares of common stock were excluded from the
computation of diluted earnings per share for the three and nine months
ended June 30, 2001, respectively, as their effect would be anti-dilutive.
Options to purchase approximately 254,000 and 205,000 shares of common
stock were excluded from the computation of diluted earnings per share for
the three and nine months ended June 30, 2000, respectively, as their
effect would be anti-dilutive. However, these options and conversions could
become dilutive in future periods.

4. COMPREHENSIVE INCOME (LOSS)

Comprehensive income (loss) for the Company is computed as the sum of net
income and the change in the cumulative translation adjustment, which is
the only component of the Company's accumulated other comprehensive loss.
The Company's comprehensive loss for the three and nine month periods ended
June 30, 2001 was $82,000 and $658,000, respectively. Comprehensive
income was $2,337,000 and $6,544,000 for the three and nine month periods
ended June 30, 2000, respectively.
11

BROOKS AUTOMATION, INC.
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (unaudited) - Continued


5. SEGMENT AND GEOGRAPHIC INFORMATION

The Company has three reportable segments: tool automation systems, factory
interface solutions and factory automation solutions. The tool automation
systems segment provides a full complement of semiconductor wafer and flat
panel display substrate handling systems, products and components and
products for data storage. The factory interface solutions segment provides
hardware and software solutions, including minienvironments and automated
transfer mechanisms, to isolate the semiconductor wafer from the production
environment. The factory automation segment provides software products for
the semiconductor manufacturing execution system ("MES") market, including
consulting and software customization.

The Company evaluates performance and allocates resources based on revenues
and operating income (loss). Operating income (loss) for each segment
includes selling, general and administrative expenses directly attributable
to the segment. Amortization of acquired intangible assets and
acquisition-related charges are excluded from the segments' operating
income (loss). The Company's non-allocable overhead costs, which include
corporate general and administrative expenses, are allocated between the
segments based upon segment revenues. Segment assets exclude deferred
taxes, acquired intangible assets, all assets of the Company's Securities
Corporation and investments in subsidiaries.

The Company had two reportable segments in the prior year. Additionally,
during the three months ended June 30, 2001, the Company transferred one of
its business units from the factory interface solutions segment to the tool
automation systems segment to more accurately reflect that business unit's
current and projected revenues. At the same time, the Company transferred
one of its business units from the factory automation solutions segment to
the tool automation systems segment in order capitalize on synergies within
the tool automation systems segment and enhance the activities of that
business unit. Accordingly, all prior period amounts have been restated to
reflect these changes and conform to current presentation.

Financial information for the Company's business segments is as follows (in
thousands):

<TABLE>
<CAPTION>

Tool Factory Factory
Automation Interface Automation
Systems Solutions Solutions Total
---------------- --------------- -------------- ----------------
<S> <C> <C> <C> <C>
Three months ended June 30, 2001
Revenues $ 38,236 $ 25,161 $ 30,370 $ 93,767
Gross margin $ 13,960 $ 7,702 $ 21,360 $ 43,022
Operating income $ 2,157 $ 2,105 $ 35 $ 4,297

Three months ended June 30, 2000
Revenues $ 46,940 $ 17,784 $ 23,103 $ 87,827
Gross margin $ 19,173 $ 5,537 $ 15,205 $ 39,915
Operating income $ 6,945 $ 1,791 $ 1,197 $ 9,933

Nine months ended June 30, 2001
Revenues $150,737 $ 72,688 $ 86,660 $310,085
Gross margin $ 54,914 $ 26,015 $ 56,884 $137,813
Operating income (loss) $ 21,060 $ 5,668 $ (317) $ 26,411

Nine months ended June 30, 2000
Revenues $119,348 $ 46,593 $ 55,839 $221,780
Gross margin $ 49,481 $ 14,110 $ 38,802 $102,393
Operating income $ 17,537 $ 2,209 $ 5,269 $ 25,015

Assets

June 30, 2001 $216,656 $ 46,563 $ 51,683 $314,902
September 30, 2000 $128,713 $ 48,505 $ 37,858 $215,076
</TABLE>
12

BROOKS AUTOMATION, INC.
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (unaudited) - Continued



A reconciliation of the Company's reportable segment operating income to
the corresponding consolidated amounts for the three and nine month periods
ended June 30, 2001 and 2000 is as follows (in thousands):

<TABLE>
<CAPTION>

Three months ended Nine months ended
June 30, June 30,
-------------------- --------------------
2001 2000 2001 2000
------- -------- ------- -------

<S> <C> <C> <C> <C>
Segment operating income $ 4,297 $ 9,933 $26,411 $25,015
Amortization of acquired intangible assets 7,844 4,907 20,479 10,614
Acquisition-related charges 699 677 1,717 677
------- ------- ------- -------
Total operating income (loss) $(4,246) $ 4,349 $ 4,215 $13,724
======= ======= ======= =======
</TABLE>

A reconciliation of the Company's reportable segment assets to the
corresponding consolidated amounts as of June 30, 2001 and September 30,
2000 is as follows (in thousands):

<TABLE>
<CAPTION>

June 30, September 30,
2001 2000
---------- -------------

<S> <C> <C>
Segment assets $ 314,902 $ 215,076
Deferred tax asset 37,386 31,313
Acquired intangible assets 107,066 58,405
Securities Corporation assets 275,384 208,334
--------- ---------
$ 734,738 $ 513,128
========= =========
</TABLE>

Net revenues by geographic area are as follows (in thousands):

<TABLE>
<CAPTION>

Three months ended Nine months ended
June 30, June 30,
---------------------- -----------------------
2001 2000 2001 2000
-------- --------- -------- ---------

<S> <C> <C> <C> <C>
North America $ 41,924 $ 46,902 $ 160,955 $ 111,741
Asia/Pacific 35,600 28,647 95,073 71,485
Europe 16,243 12,278 54,057 38,554
-------- -------- --------- ---------
$ 93,767 $ 87,827 $ 310,085 $ 221,780
======== ======== ========= =========
</TABLE>

6. SIGNIFICANT CUSTOMERS AND RELATED PARTY INFORMATION

One of the Company's directors had previously also been a director of one
of the Company's customers. On January 23, 2001, this individual resigned
his position with the Company's customer. Accordingly, this customer is not
considered a related party in subsequent reporting periods. Revenues
recognized from this customer in the current fiscal year through January
23, 2001 were $13.9 million. Revenues recognized from this customer in the
three and nine months ended June 30, 2000 were $9.9 million and $25.5
million, or 11.3% and 11.5% of revenues, respectively. Revenues from this
customer for the three and nine month periods ended June 30, 2001 did not
comprise more than 10% of revenues. The amount due from this customer
included in accounts receivable at September 30, 2000 was $6.8 million.
13

BROOKS AUTOMATION, INC.
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (unaudited) - Continued


The Company had one customer that accounted for more than 10% of revenues
in the three months ended June 30, 2001. Revenues from that customer
comprised 10.8% of revenues for the period. The Company had no other
customers that accounted for more than 10% of revenues in the three or nine
month periods ended June 30, 2001 or in either the three or nine month
periods ended June 30, 2000.

On June 11, 2001, the Company appointed a new member to its Board of
Directors. This individual is also a director of one of the Company's
customers. Accordingly, this customer will be considered a related party
for the period subsequent to June 11, 2001. Revenues from this customer for
the period from June 11, 2001 through June 30, 2001 are not material to the
consolidated results of the Company. The amount due from this customer
included in accounts receivable at June 30, 2001 was $0.3 million.

Related party amounts included in accounts receivable are on standard terms
and manner of settlement.

7. ACQUISITION-RELATED AND RESTRUCTURING LIABILITIES

The activity related to the Company's acquisition-related and restructuring
liabilities during the nine months ended June 30, 2001, is below (in
thousands):

<TABLE>
<CAPTION>

Balance Balance
September 30, June 30,
2000 Utilization 2001
-------------- ----------- ----------

<S> <C> <C> <C>
Facilities $ 507 $(117) $ 390
Workforce-related 20 (20) --
Other 11 -- 11
----- ----- -----
$ 538 $(137) $ 401
===== ===== =====
</TABLE>

8. CONVERTIBLE SUBORDINATED NOTES

On May 23, 2001, the Company completed the private placement of $175.0
million aggregate principal amount of 4.75% Convertible Subordinated Notes
due 2008. The amount sold includes $25.0 million principal amount of notes
purchased by the initial purchasers upon exercise in full of their 30-day
option to purchase additional notes. The Company received net proceeds of
$169.5 million from the sale.

Interest on the notes will be paid on June 1 and December 1 of each year,
with the first interest payment due on December 1, 2001. The notes will
mature on June 1, 2008. The Company may redeem the notes on or after June
6, 2004, or earlier if the price of the Company's common stock reaches the
prices described in the offering circular. Holders may require the Company
to repurchase the notes upon a change in control of the Company in certain
circumstances. The notes are convertible at any time prior to maturity, at
the option of the holders, into shares of the Company's common stock, at a
conversion price of $70.23 per share, subject to certain adjustments. The
notes are subordinated to the Company's senior indebtedness and
structurally subordinated to all indebtedness and other liabilities of the
Company's subsidiaries.
14

BROOKS AUTOMATION, INC.
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (unaudited) - Continued



9. OTHER BALANCE SHEET INFORMATION

Components of other selected captions in the Consolidated Balance Sheets
follow (in thousands):

<TABLE>
<CAPTION>

June 30, September 30,
2001 2000
--------- -------------

<S> <C> <C>
Accounts receivable $ 116,287 $ 94,709
Less allowances 3,280 1,930
--------- --------
$ 113,007 $ 92,779
========= ========
Inventories
Raw materials and purchased parts $ 47,215 $ 33,827
Work-in-process 13,387 13,668
Finished goods 4,505 9,480
--------- --------
$ 65,107 $ 56,975
========= ========
Intangible assets
Patents $ 4,187 $ 6,781
Capitalized software 3,129 1,805
Completed technology 4,505 4,505
License agreements 678 678
Trademarks and trade names 1,564 1,564
Non-competition agreements 1,033 1,033
Assembled workforces 5,880 5,880
Customer relationships 1,305 1,305
Goodwill 127,736 58,638
--------- --------
150,017 82,189
Less accumulated amortization 40,395 21,926
--------- --------
$ 109,622 $ 60,263
========= ========
</TABLE>

10. CONTINGENCY

There has been substantial litigation regarding patent and other
intellectual property rights in the semiconductor and related industries.
In 1992, the Company received notice from a third party alleging
infringements of such party's patent rights by certain of the Company's
products. The Company believes the patents claimed may be invalid. In the
event of litigation with respect to this claim, the Company is prepared to
vigorously defend its position. However, because patent litigation can be
extremely expensive and time consuming, the Company may seek to obtain a
license to one or more of the disputed patents. Based upon currently
available information, the Company would only do so if such license fees
would not be material to the Company's consolidated financial statements.
Currently, the Company does not believe it is probable that the future
events related to this threatened matter would have an adverse effect on
the Company's business.
15

BROOKS AUTOMATION, INC.
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (unaudited) - Continued

11. SUBSEQUENT EVENT

On July 12, 2001, the Company acquired Progressive Technologies, Inc.
("PTI") in a transaction to be accounted for as a pooling of interests. As
part of the merger, the Company issued 715,004 shares of Brooks common
stock, with an aggregate value of approximately $31.5 million at the time
of issuance, to the shareholders of PTI. PTI is a leading manufacturer of
high-precision air flow and pressure control systems for semiconductor
processing, headquartered in Tewksbury, Massachusetts. PTI will become a
business unit within the Company's Factory Interface Solutions segment.
16

BROOKS AUTOMATION, INC.

Item 2. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS


FORWARD-LOOKING STATEMENTS

Certain statements in this quarterly report constitute "forward-looking
statements" which involve known risks, uncertainties, and other factors which
may cause the actual results, performance, or achievements of Brooks to be
materially different from any future results, performance, or achievements
expressed or implied by such forward-looking statements. Such factors include
the factors that may affect future results set forth in Management's Discussion
and Analysis of Financial Condition and Results of Operations, which is included
in this report. Precautionary statements made herein should be read as being
applicable to all related forward-looking statements whenever they appear in
this report.

OVERVIEW

Brooks Automation, Inc. ("Brooks" or the "Company") is a leading supplier of
integrated tool and factory automation solutions for the global semiconductor
and related industries such as the data storage and flat panel display
manufacturing industries. Brooks has distinguished itself as a technology and
market leader, particularly in the demanding cluster-tool vacuum-processing
environment and in integrated factory automation software applications. The
Company's offerings have grown from individual robots used to transfer
semiconductor wafers in advanced production equipment to fully integrated
automation solutions that control the flow of resources in the factory from
process tools to factory scheduling and dispatching. In 1998, the Company began
an aggressive program of investment and acquisition. By the close of fiscal year
2000, Brooks had emerged as one of the leading suppliers of factory and tool
automation solutions for semiconductor and original equipment manufacturers.

Many of the Company's customers purchase the Company's vacuum transfer robots
and other modules before purchasing the Company's vacuum central wafer handling
systems. The Company believes that once a customer has selected the Company's
products for a process tool, the customer is likely to rely on those products
for the life of that process tool model, which can be in excess of five years.
Conversely, losing a bid for a manufacturing execution system ("MES") does not
preclude the Company from securing optimization products to fit with a
competitor's MES.

A significant portion of the Company's revenues have been generated by sales to
customers in the United States, although the Company believes that a significant
portion of these customers incorporate the Company's products into equipment
sold to their foreign customers. The Company's foreign sales have occurred
principally in Asia and Europe. Sales in Asia have occurred primarily in Japan,
South Korea and Taiwan, and, to a lesser extent, in Singapore.

The Company's foreign revenues are generally denominated in United States
dollars. Accordingly, foreign currency fluctuations have not had a significant
impact on the comparison of the results of operations for the periods presented.
The costs and expenses of the Company's international subsidiaries are generally
denominated in currencies other than the United States dollar. However, since
the functional currency of the Company's international subsidiaries is the local
currency, foreign currency translation adjustments are reflected as a component
of stockholders' equity under the caption "Accumulated other comprehensive
income (loss)". To the extent that the Company expands its international
operations or changes its pricing practices to denominate prices in foreign
currencies, the Company will be exposed to increased risk of currency
fluctuation.
17

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

BASIS OF PRESENTATION

On June 26, 2001, the Company completed the purchase of KLA-Tencor, Inc.'s
e-Diagnostics product line infrastructure ("e-Diagnostics"). The e-Diagnostics
programs enable service and support teams to remotely access their tools in
customer fabs in real-time to diagnose and resolve problems quickly and
cost-effectively. On June 25, 2001, the Company acquired CCS Technology, Inc.
("CCST"), a supplier of 300mm automation test and certification software located
in Williston, Vermont. These transactions were recorded using the purchase
method of accounting in accordance with Accounting Principles Board Opinion No.
16, "Business Combinations" ("APB 16"). The results of operations for the
e-Diagnostics product line infrastructure and CCST for the periods from their
respective acquisitions to June 30, 2001, are not material to the consolidated
results of the Company.

On May 15, 2001, Brooks acquired SimCon N.V. ("SimCon"), a value-added reseller
for the Company's simulation, scheduling, production analysis and dispatching
software headquartered in Belgium. On February 16, 2001, the Company acquired
SEMY Engineering, Inc. ("SEMY"), a provider of advanced process and equipment
control systems for the semiconductor industry located in Phoenix, Arizona. On
December 13, 2000, the Company acquired substantially all of the assets of a
scheduling and simulation software and services distributor in Japan. These
transactions were recorded using the purchase method of accounting in accordance
with APB 16. Accordingly, the Company's Consolidated Statements of Operations
for the three and nine months ended June 30, 2001 and Consolidated Statement of
Cash Flows for the nine months then ended include the results of these acquired
entities for the periods subsequent to their respective acquisitions.

The Company made several acquisitions during fiscal year 2000 which were
accounted for using the purchase method of accounting in accordance with APB16:
MiTeX Solutions ("MiTeX") on June 23, 2000 and Auto-Soft Corporation ("ASC") and
AutoSimulations, Inc. ("ASI") on January 6, 2000. The Company's Consolidated
Statements of Operations and of Cash Flows include the results of these entities
for the periods subsequent to their respective acquisitions.

RESULTS OF OPERATIONS

The Company's business is significantly dependent on capital expenditures by
semiconductor manufacturers, which are, in turn, dependent on the current and
anticipated market demand for semiconductors. The Company's revenues grew
substantially in fiscal 2000 compared to fiscal 1999 due in large part to high
levels of capital expenditures of semiconductor manufacturers. Demand for
semiconductors is cyclical and has historically experienced periodic downturns.
The semiconductor industry is currently experiencing such a
18

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

downturn. As a result, the Company anticipates lower shipments of its products
in the next few quarters, compared to the quarter ended June 30, 2001. In the
quarter ended March 31, 2001, the Company had taken selective cost reduction
actions in many areas of its business in response to this downturn. However,
during the current quarter, the Company began to implement additional steps to
manage costs, including further reductions to headcount, salary and wage
reductions and reduced spending. Although the Company will continue to take a
proactive approach to cost management in response to this downturn, it will
continue to invest in those areas which it believes are important to the
long-term growth of the Company, such as its infrastructure, customer support
and new products.

Three and Nine Months Ended June 30, 2001, Compared to Three and Nine
Months Ended June 30, 2000

The Company reported net income of $0.3 million for the three months ended June
30, 2001, compared to $2.5 million in the same prior year period. The Company's
net income for the nine months ended June 30, 2001 was $2.6 million, compared to
$7.4 million in the same prior year period.

The results for the three months ended June 30, 2001 include $7.8 million of
amortization of acquired intangible assets and $0.7 million of
acquisition-related costs; the results for the prior year quarter include $4.9
million of amortization of acquired intangible assets and $0.7 million of
acquisition-related costs. The results for the nine months ended June 30, 2001
include $20.5 million of amortization of acquired intangible assets and $1.7
million of acquisition-related costs; included in the prior year period results
is $10.6 million of amortization of acquired intangible assets and $0.7 million
of acquisition-related costs.

The reduced earnings in the current fiscal year also are partially attributable
to the effect of the goodwill amortization recorded for the acquisition of ASC
and ASI, which is non-deductible for purposes of the Company's income tax
provision. As pre-tax earnings have declined due to the overall downturn in the
semiconductor industry, the effective tax rate has increased due to the
significant amount of goodwill amortization that cannot be deducted.

Revenues

The Company reported revenues of $93.8 million in the three months ended June
30, 2001, compared to $87.8 million in the same prior year period. For the nine
months ended June 30, 2001, the Company reported revenues of $310.1 million.
This compares to revenues of $221.8 million in the nine months ended June 30,
2000. The overall increase in revenues is principally attributable to
incremental revenue from acquisitions and the strength earlier in the fiscal
year in both the original equipment manufacturer ("OEM") and end user markets.

The Company's tool automation systems segment reported revenues of $38.2 million
in the three months ended June 30, 2001, a decrease of 18.5%, from the same
prior year period. However, the segment's revenues for the nine months ended
June 30, 2001, increased 26.3%, to $150.7 million, from the same prior year
period. The decrease for the three month period is attributable to the current
downturn in the semiconductor industry, while the overall nine month increase is
primarily attributable to growth in the vacuum business area earlier in the
fiscal year. The Company's factory interface solutions segment reported
increases of 41.5% and 56.0%, to $25.2 million and $72.7 million, in the three
and nine months ended June 30, 2001, respectively, compared to the same prior
year periods, reflecting in part the strong growth in the Company's SMIF product
line. The Company's factory automation solutions segment reported revenues of
$30.4 million and $86.7 million in the three and nine months ended June 30,
2001, respectively. This segment's revenues increased 31.5% for the three month
period and 55.2% for the nine month period ended June 30, 2001, compared to the
same prior year periods. These increases are principally due to internal growth,
the acquisition of SEMY on February 16, 2001, and the acquisition of ASC and ASI
on January 6, 2000.
19

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

Product revenues increased $0.7 million, to $72.2 million, in the three months
ended June 30, 2001, compared to $71.5 million in the three months ended June
30, 2000. Product revenues of $243.6 million for the nine months ended June 30,
2001, were 32.1% higher than the $184.4 million reported in the same prior year
period. This growth is primarily attributable to acquisitions and internal
growth, including increased 300mm sales.

Service revenues for the three months ended June 30, 2001 were $21.6 million, an
increase of $5.3 million, or 32.1%, from the three months ended June 30, 2000.
Service revenues for the nine months ended June 30, 2001 increased $29.1
million, to $66.5 million, a 77.9% increase from the $37.4 million reported in
the same prior year period. These increases are primarily attributable to the
Company's acquisitions and internal growth.

Foreign revenues were $51.8 million, or 55.3% of revenues, and $40.9 million, or
46.6% of revenues, in the three month periods ended June 30, 2001 and 2000,
respectively. For the nine month periods ended June 30, 2001 and 2000, foreign
revenues were $149.5 million, or 48.2% of revenues, and $110.1 million, or 49.7%
of revenues, respectively. The absolute increases in both the three and nine
month periods are primarily the result of the Company's expanded global presence
from its recent acquisitions and expanded sales and marketing activities. The
Company expects that foreign revenues will continue to account for a significant
portion of total revenues.

Gross Margin

Gross margin increased to 45.9% for the three months ended June 30, 2001,
compared to 45.4% for the same prior year period. Gross margin for the nine
months ended June 30, 2001 was 44.4%, a decrease from 46.2% for the comparable
prior year period.

The Company's tool automation systems segment gross margins decreased to 36.5%
and 36.4%, for the three and nine month periods ended June 30, 2001,
respectively, compared to 40.8% for the three month period ended June 30, 2000
and 41.5% for the nine months then ended. These decreases are primarily
attributable to change in product mix and newer products which have not yet
achieved their optimal manufacturing volume, coupled with the effects of the
current downturn in the semiconductor industry. Gross margin for the Company's
factory interface solutions segment was 30.6% for the three months ended June
30, 2001, a slight decrease from 31.1% for the same prior year period. However,
the segment's gross margin for the nine months ended June 30, 2001 increased
compared to the same prior year period, to 35.8% from 30.3%, respectively. The
nine month increases are primarily the result of product and services mix. The
Company's factory automation solutions gross margin increased, to 70.3% for the
three months ended June 30, 2001, from 65.8% for the same prior year period.
However, the segment's gross margin for the nine months ended June 30, 2001
decreased, to 65.6%, compared to 69.5% for the nine months ended June 30, 2000.
The increase for the three month period is primarily attributable to the
Company's cost reduction initiatives, while the decrease for the nine month
period is primarily attributable to product and services mix.

Gross margin on product revenues was 49.3% for the three months ended June 30,
2001, an increase from 47.7% for the same prior year period. The Company's
product gross margin for the nine months ended June 30, 2001, also increased, to
48.8%, from 47.7% for the nine months ended June 30, 2000. The increases are
principally attributable to product mix.
20

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

Gross margin on service revenues decreased to 34.3% and 28.6% for the three and
nine months ended June 30, 2001, respectively, from 35.4% and 38.5% for the
three and nine months ended June 30, 2000, respectively, and are primarily the
result of business mix.

Research and Development

Research and development expenses for the three months ended June 30, 2001 were
$16.2 million, an increase of $4.9 million, compared to $11.3 million in the
three months ended June 30, 2000. Research and development expenses for the nine
months ended June 30, 2001 were $44.6 million, an increase of $15.2 million, or
51.6%, compared to the same prior year period. Research and development expenses
increased as a percentage of revenues in the three months ended June 30, 2001,
to 17.3%, compared to 12.9% in the same prior year period. The increase in these
expenditures as a percentage of revenues for this three month period is
attributable in part to the downturn currently affecting the semiconductor
industry, which began to impact the Company during the previous quarterly
period. To a lesser extent, this increase is attributable to higher spending
levels associated with the Company's recent acquisitions. For the nine months
ended June 30, 2001, research and development expenses also increased as a
percentage of revenues, to 14.4%, from 13.3% in the same prior year period. The
increase in absolute spending is the result of the research and development
related to the Company's recent acquisitions as well as incremental spending
associated with the launch of new atmospheric products and the transition to the
next generation vacuum wafer handling products, partially offset by the
elimination of redundant research and development programs. The Company plans to
continue to invest in research and development to enhance existing and develop
new tool and factory hardware and software automation solutions for the
semiconductor, data storage and flat panel display manufacturing industries.

Selling, General and Administrative

Selling, general and administrative expenses were $22.5 million for the three
months ended June 30, 2001, an increase of $3.8 million, compared to $18.7
million in the same prior year period. Selling, general and administrative
expenses increased by $18.8 million, to $66.8 million, for the nine months ended
June 30, 2001, compared to $48.0 million for the nine months ended June 30,
2000. Selling, general and administrative expenses increased as a percentage of
revenues in the three months ended June 30, 2001, to 24.0%, from 21.2% in the
same prior year period. The increase as a percentage of revenues for this period
is in part a result of the industry downturn. Selling, general and
administrative expenses decreased slightly as a percentage of revenues in the
nine months ended June 30, 2001, to 21.5%, from 21.6% in the same prior year.
The increase in absolute spending is the result of expanded sales and marketing
activities as well as general and administration support costs associated with
the Company's recently completed acquisitions and infrastructure improvements,
while the nine month improvement of these costs as a percentage of revenues
reflects the Company's efforts at expanding its product offerings and customer
base.

Amortization of Acquired Intangible Assets

Amortization expense for acquired intangible assets totaled $7.8 million and
$20.5 million in the three and nine months ended June 30, 2001, respectively,
and relates to the intangible assets recorded by the Company for the
acquisitions of SimCon, SEMY and ASI-Japan in the current fiscal year; ASC, ASI
and MiTeX in the prior fiscal year; Infab, Domain and Hanyon in the fiscal year
ended September 30, 1999 and Irvine Optical's acquisition of a corporation in
March 1997. Amortization expense related to the intangible assets recorded by
the Company for the acquisitions of the e-Diagnostics infrastructure and CCST
21

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

were not material to the consolidated results of the Company. Amortization
expense for acquired intangible assets was $4.9 million and $10.6 million in the
three and nine month periods ended June 30, 2000, respectively.

Acquisition-related Charges

The Company reported $0.7 million and $1.7 million of acquisition-related
charges in the three and nine months ended June 30, 2001, respectively. The
Company recorded $0.7 million of acquisition-related charges in both the three
and nine month periods ended June 30, 2000.

Interest Income and Expense

Interest income decreased by $0.8 million, to $3.0 million, in the three months
ended June 30, 2001, compared to the same prior year period, primarily a result
of lower interest rates. However, interest income increased by $3.6 million, to
$9.1 million, in the nine months ended June 30, 2001 from the comparable prior
year period. This increase is due primarily to higher cash and investment asset
balances which resulted from the Company's recently completed private placement
of $175.0 million aggregate Convertible Subordinated Notes and the public
offering of shares of its common stock in March 2000. Interest expense also
increased, to $1.0 million for the three months ended June 30, 2001, compared to
$0.3 million in the same prior year period. Interest expense for the nine months
ended June 30, 2001 was $1.3 million, an increase of $0.2 million from the same
prior year period. Interest expense in the three months ended June 30, 2001
primarily relates to the Company's Convertible Subordinated Notes. Interest
expense in the nine months then ended primarily relates to the Company's
Convertible Subordinated Notes and the Company's note payable to Daifuku America
in connection with the acquisition of ASC and ASI, which was discharged on
January 5, 2001. Interest expense in the comparable prior year periods primarily
relates to Irvine Optical's debt, which was paid by Brooks subsequent to the
Company's acquisition of Irvine Optical, and the Company's note payable to
Daifuku America. The Company anticipates increased interest expense in
subsequent periods as a result of the outstanding Convertible Subordinated
Notes, as well as imputed interest expense on the notes payable related to the
Company's recent acquisitions of the e-Diagnostics infrastructure and SimCon.

Income Tax Provision

The Company recorded net income tax expense of $9.2 million and $10.8 million
for the nine months ended June 30, 2001 and 2000, respectively. The tax
provision is attributable to federal, state, foreign and withholding taxes. As
discussed above, the effect of the non-deductible goodwill amortization recorded
for the acquisition of ASC and ASI has a material effect on the income tax
provision. As pre-tax earnings have declined due to the overall downturn in the
semiconductor industry, the effective tax rate has increased due to the
significant amount of goodwill amortization that cannot be deducted.

Federal and state taxes have been reduced for net operating losses, research and
development and foreign tax credits and an extraterritorial income benefit which
replaced the foreign sales corporation benefit.
22

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

LIQUIDITY AND CAPITAL RESOURCES

Cash and cash equivalents were $194.8 million at June 30, 2001, an increase of
$63.6 million from September 30, 2000. This increase in cash and cash
equivalents is primarily the result of proceeds of $169.5 million, net of costs,
from the Company' private placement of Convertible Subordinated Notes completed
on May 23, 2001, partially offset by payment of net cash consideration of $34.7
million for SEMY on February 16, 2001, payment of the Company's $16.0 million
note payable to Daifuku America on January 5, 2001 in connection with its
January 2000 acquisition of ASC and ASI, and the purchase of the Company's
headquarters complex on January 29, 2001 for approximately $29 million in cash.

Cash provided by operations was $10.1 million for the nine months ended June 30,
2001, and is primarily attributable to net income, the adjustment to net income
of $31.4 million for depreciation and amortization and an increase in accrued
expenses and other current liabilities of $14.3 million, partially offset by
increases in accounts receivable, inventories and the Company's net deferred tax
asset of $12.9 million, $7.3 million and $8.7 million, respectively, and a $5.1
million decrease in accounts payable. The Company's increased sales,
particularly in Asia, combined with a greater number of long-term project
contracts, have contributed to the increase in accounts receivable.

Cash used in investing activities was $106.6 million for the nine months ended
June 30, 2001, and was principally comprised of $133.7 million invested in
marketable securities, $34.7 million for the purchase of SEMY, net of cash
acquired, $3.4 million of cash payments for other acquisitions, net of cash
acquired, $43.2 million used for capital additions, including $28.9 million for
the purchase of the Company's headquarters complex located in Chelmsford,
Massachusetts and $14.3 million used for the purchase of other assets. These
expenditures were partially offset by the sale of $100.3 million of the
Company's investments in marketable securities and $6.0 million in cash payments
to the Company for settlements related to previous acquisitions the Company had
made.

Cash provided by financing activities was $160.4 million for the nine months
ended June 30, 2001, and is primarily comprised of $169.5 million, net of costs,
received from the private placement of Convertible Subordinated Notes and $7.3
million from the issuance of stock under the Company's employee stock purchase
plan and the exercise of options to purchase the Company's common stock. These
amounts were partially offset by $16.0 million paid to retire the Company's note
payable to Daifuku America in connection with the acquisition of ASC and ASI and
$0.4 million for the payment of long-term debt.

While the Company has no significant capital commitments, as it expands its
product offerings, the Company anticipates that it will continue to make capital
expenditures to support its business and improve its computer systems
infrastructure. In addition, assuming none of the Convertible Subordinated Notes
are converted into common stock, the Company expects to expend approximately $8
million per year on interest related to these notes. The Company may also use
its resources to acquire companies, technologies or products that complement the
business of the Company.

The Company terminated its $30.0 million unsecured revolving credit facility and
replaced it with a $10.0 million uncommitted demand promissory note facility
with ABN AMRO Bank N.V. ("ABN AMRO") on May 2, 2000. The Company transferred all
of its outstanding letters of credit, totaling approximately $1.1 million, to
the new facility. ABN AMRO is not obligated to extend loans or issue letters of
credit under this new facility. At June 30, 2001, approximately $0.3 million of
the facility was in use, all of it for letters of credit.

The Company believes that its existing resources will be adequate to fund the
Company's currently planned working capital and capital expenditure requirements
for at least the next twelve months. The sufficiency of the Company's resources
to fund its needs for capital is subject to known and unknown risks,
uncertainties and other factors which may have a material adverse effect on the
Company's business, including, without limitation, the factors discussed under
"Factors That May Affect Future Results."
23

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

RECENTLY ENACTED ACCOUNTING PRONOUNCEMENTS

In July 2001, the Financial Accounting Standards Board issued Statements of
Financial Accounting Standards No. 141 ("FAS 141"), "Business Combinations" and
No. 142 ("FAS 142"), "Goodwill and Other Intangible Assets" effective for fiscal
years beginning after December 15, 2001. FAS 141 requires business combinations
initiated after June 30, 2001 to be accounted for using the purchase method of
accounting, and broadens the criteria for recording intangible assets separate
from goodwill. FAS 142 requires that goodwill and identifiable intangible assets
determined to have an indefinite life no longer be amortized, but instead be
tested for impairment at least annually. The Company is required to adopt FAS
142 in the fiscal year beginning October 1, 2002, at which time amortization off
goodwill will cease. The Company is currently assessing the impact of FAS 142 on
its financial position and results of operations.

In December 1999, the U.S. Securities and Exchange Commission ("SEC") issued
Staff Accounting Bulletin No. 101 ("SAB 101"), "Revenue Recognition in Financial
Statements". SAB 101 summarizes the SEC's views in applying generally accepted
accounting principles to selected revenue recognition issues in financial
statements. In June 2000, the SEC issued Staff Accounting Bulletin No. 101B, an
amendment to SAB 101, which delays the implementation of SAB 101. The
application of the guidance in SAB 101 will now be required in the Company's
fourth quarter of fiscal 2001. The Company does not anticipate the adoption of
SAB 101 to have a significant impact on financial results in the current fiscal
year.
24

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

FACTORS THAT MAY AFFECT FUTURE RESULTS

You should carefully consider the risks described below and the other
information in this report before deciding to invest in shares of our common
stock. While these are the risks and uncertainties we believe are most important
for you to consider, you should know that they are not the only risks or
uncertainties facing us or which may adversely affect our business. If any of
the following risks or uncertainties actually occur, our business, financial
condition and operating results would likely suffer. In that event, the market
price of our common stock could decline and you could lose all or part of the
money you paid to buy our common stock.

RISK FACTORS RELATING TO OUR OPERATIONS

The Cyclical Demand Of Semiconductor Manufacturers Affects Our Operating
Results.

Our business is significantly dependent on capital expenditures by semiconductor
manufacturers. The level of semiconductor manufacturers' capital expenditures is
dependent on the current and anticipated market demand for semiconductors. The
semiconductor industry is cyclical and is currently experience a downturn. We
anticipate we will have lower shipments of our products during the next few
quarters. Despite this expected reduced volume, we plan to continue to invest in
those areas which we believe are important to our long-term growth, such as our
infrastructure, customer support and new products. As a result, consistent with
our experience with downturns in the past, we believe the existing industry
downturn will lead to reduced revenues for us and may cause us to incur losses.

Our Sales Volume Depends On The Sales Volume Of Our Original Equipment
Manufacturer Customers And On Investment In Major Capital Expansion Programs By
Semiconductor Manufacturing Companies.

We sell a majority of our tool automation products to original equipment
manufacturers that incorporate our products into their equipment. Therefore, our
revenues are directly dependent on the ability of these customers to develop,
market and sell their equipment in a timely, cost-effective manner. We also
generate significant revenue in large orders from semiconductor manufacturing
companies that build new plants or invest in major automation retrofits. Our
revenue is dependent, in part, on continued capital investment of semiconductor
manufacturing companies.

We Rely On A Small Number Of Customers For A Large Portion Of Our Revenues.

We receive a significant portion of our revenues in each fiscal period from a
limited number of customers. The loss of one or more of these major customers,
or a decrease in orders by one or more customers, would adversely affect our
business. Sales to our ten largest customers accounted for approximately 42% of
our total revenues in the nine months ended June 30, 2001 and 43% of total
revenues in fiscal 2000. Sales to Lam Research Corporation, our largest
customer, accounted for approximately 9% of our total revenues for the nine
months ended June 30, 2001 and for the fiscal year ended September 30, 2000.

Delays In Or Cancellation Of Shipment Of A Few Of Our Large Orders Could
Substantially Decrease Our Revenues.

Historically, a substantial portion of our quarterly and annual revenues has
come from sales of a small number of large orders. These orders consist of
product with high selling process compared to our other products. As a result,
the timing of when we recognize revenue from one of these large orders can have
a significant impact on our total revenues and operating results for a
particular period. Our operating results could be harmed if a small number of
large orders are canceled or rescheduled by customers or cannot be filled due to
delays in manufacturing, testing, shipping or product acceptance.
25

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

We Have Significant Fixed Costs Which Are Not Easily Reduced If Revenues Fall
Below Expectations.

Our expense levels are based in part on our future revenue expectations. Many of
our expenses, particularly those relating to capital equipment and manufacturing
overhead, are relatively fixed. If we do not meet our sales goals we may be
unable to rapidly reduce these fixed costs. Our ability to reduce expenses is
further constrained because we must continue to invest in research and
development to maintain our competitive position and to maintain service and
support for our existing global customer base. Accordingly, if we suffer an
unexpected downturn in revenue, our inability to reduce fixed costs rapidly
could increase the adverse impact on our operations.

Our Lengthy Sales Cycle Requires Us To Incur Significant Expenses With No
Assurance That We Will Generate Revenue.

Our tool automation products are generally incorporated into original equipment
manufacturer equipment at the design stage. To obtain new business from our
original equipment manufacturer customers, we must develop products for
selection by a potential customer at the design stage. This often requires us to
make significant expenditures, without any assurance of success. The original
equipment manufacturer's design decisions often precede the generation of volume
sales, if any, by a year or more. We also must complete successfully a lengthy
evaluation and proposal process before we can achieve volume sales of our
factory automation software to our factory automation customers. We cannot
guarantee that we will continue to achieve design wins or satisfy evaluations by
our end-use customers of our software. We cannot guarantee that the equipment
manufactured by our original equipment manufacturing customers will be
commercially successful. If we or our original equipment manufacturing customers
fail to develop and introduce new products successfully and in a timely manner,
our business and financial results will suffer.

Our International Business Operations Expose Us To A Number Of Difficulties In
Coordinating Our Activities Abroad And In Dealing With Multiple Regulatory
Environments.

Approximately 48% of our total revenues in the nine months ended June 30, 2001,
and 49% of our total revenues in fiscal 2000, were derived from customers
located outside North America. We anticipate that international sales will
continue to account for a significant portion of our revenues. Our vendors are
located in several different foreign countries. As a result of our international
business operations, we are subject to various risks, including:

- - difficulties in staffing and managing operations in multiple locations in
many countries;

- - challenges presented by collecting trade accounts receivable in foreign
jurisdictions;

- - possible adverse tax consequences;

- - governmental currency controls;

- - changes in various regulatory requirements;

- - political and economic changes and disruptions; and

- - export/import controls and tariff regulations.
26

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

To support our international customers, we maintain locations in several
countries, including Canada, Germany, Japan, Malaysia, Singapore, South Korea,
Taiwan and the United Kingdom. We cannot guarantee that we will be able to
manage these operations effectively. We cannot assure you that our investment in
these international operations will enable us to compete successfully in
international markets or to meet the service and support needs of our customers,
some of whom are located in countries where we have no infrastructure.

Although our international sales are primarily denominated in U.S. dollars,
changes in currency exchange rates can make it more difficult for us to compete
with foreign manufacturers on price. If our international sales increase
relative to our total revenues, these factors could have a more pronounced
effect on our operating results.

We Must Continually Improve Our Technology To Remain Competitive.

Technology changes rapidly in the semiconductor, data storage and flat panel
display manufacturing industries. We believe our success depends in part upon
our ability to enhance our existing products and to develop and market new
products to meet customer needs. We cannot guarantee that we will identify and
adjust to changing market conditions or succeed in introducing commercially
rewarding products or product enhancements. The success of our product
development and introduction depends on a number of factors, including:

- - accurately identifying and defining new market opportunities and products;

- - completing and introducing new product designs in a timely manner;

- - market acceptance of our products and our customers' products;

- - development of a comprehensive, integrated product strategy; and

- - efficient implementation and installation services.

We Face Significant Competition Which Could Result In Decreased Demand For Our
Products Or Services.

The markets for our products are intensely competitive and we may be unable to
compete successfully. We believe that our primary competition in the tool
automation market is from integrated original equipment manufacturers that
satisfy their semiconductor and flat panel display handling needs internally
rather than by purchasing systems or modules from an independent supplier like
us. Many of these original equipment manufacturers have substantially greater
resources than we do. Applied Materials, Inc., the leading process equipment
original equipment manufacturer, develops and manufactures its own central wafer
handling systems and modules. We may not be successful in selling our products
to original equipment manufacturers that internally satisfy their wafer or
substrate handling needs, regardless of the performance or the price of our
products. Moreover, integrated original equipment manufacturers may begin to
commercialize their handling capabilities and become our competitors.

We believe that the primary competitive factors in the end-user semiconductor
manufacturer market for factory automation software and process control software
are product functionality, price/performance, ease of use, ease of integration,
hardware and software platform compatibility, vendor reputation and financial
stability. The relative importance of these competitive factors may change over
time. We directly compete in this market with various competitors, including
Applied Materials-Consilium, PRI, IBM and numerous small, independent software
companies. We also compete with the in-house software staffs of semiconductor
manufacturers like NEC. Most of those manufacturers have substantially greater
resources than we do.
27

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

We believe that the primary competitive factors in the factory interface market
are technical and technological capabilities, reliability, price/performance,
ease of integration and global sales and support capability. In this market, we
compete directly with Asyst, Fortrend, Kensington and Rorze. Some of these
competitors have substantial financial resources and extensive engineering,
manufacturing and marketing capabilities.

Much Of Our Success And Value Lies In Our Ownership And Use Of Intellectual
Property And Our Failure To Protect That Property Could Adversely Affect Our
Future Growth.

Our ability to compete is heavily affected by our ability to protect our
intellectual property. We rely primarily on trade secret laws, confidentiality
procedures, patents, copyrights, trademarks and licensing arrangements to
protect our intellectual property. The steps we have taken to protect our
technology may be inadequate. Existing trade secret, trademark and copyright
laws offer only limited protection. Our patents could be invalidated or
circumvented. The laws of certain foreign countries in which our products are or
may be developed, manufactured or sold may not fully protect our products or
intellectual property rights. This may make the possibility of piracy of our
technology and products more likely. We cannot guarantee that the steps we have
taken to protect our intellectual property will be adequate to prevent
misappropriation of our technology. There has been substantial litigation
regarding patent and other intellectual property rights in semiconductor-related
industries. We may engage in litigation to:

- - enforce our patents;

- - protect our trade secrets or know-how;

- - defend ourselves against claims alleging we infringe the rights of
others; or

- - determine the scope and validity of the patents or intellectual property
rights of others.

Any litigation could result in substantial cost to us and divert the attention
of our management, which could harm our operating results and our ability to
grow.

Our Operations Could Infringe On The Intellectual Property Rights Of Others.

Particular aspects of our technology could be found to infringe on the
intellectual property rights or patents of others. Other companies may hold or
obtain patents on inventions or may otherwise claim proprietary rights to
technology necessary to our business. We cannot predict the extent to which we
may be required to seek licenses or alter our products so that they no longer
infringe the rights of others. We cannot guarantee that the terms of any
licenses we may be required to seek will be reasonable. Similarly, changing our
products or processes to avoid infringing the rights of others may be costly or
impractical or could detract from the value of our products.

Our Business May Be Harmed By Infringement Claims Of General Signal Or Applied
Materials.

We received notice from General Signal Corporation alleging certain of our
products infringed its patent rights. The notification advised us that General
Signal was attempting to enforce its rights to those patents in litigation
against Applied Materials, and that, at the conclusion of that litigation,
General Signal intended to enforce its rights against us and others. According
to a press release issued by Applied Materials in November 1997, Applied
Materials settled its litigation with General Signal by acquiring ownership of
five General Signal patents. Although not verified by us, these five patents
would appear to be the patents referred to by General Signal in its prior notice
to us. Applied Materials has not contacted us regarding these patents.
28

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

We Do Not Have Long-Term Contracts With Our Customers And Our Customers May
Cease Purchasing Our Products At Any Time.

We generally do not have long-term contracts with our customers. As a
result, our agreements with our customers do not provide any assurance of
future sales. Accordingly:

- - our customers can cease purchasing our products at any time without penalty;

- - our customers are free to purchase products from our competitors;

- - we are exposed to competitive price pressure on each order; and

- - our customers are not required to make minimum purchases.

Our Operating Results Would Be Harmed If One Of Our Key Suppliers Fails To
Deliver Components For Our Products.

We currently obtain many of our components on an as needed, purchase order
basis. We do not have any long-term supply contracts with our vendors. When
demand for semiconductor manufacturing equipment increases, our suppliers face
significant challenges in providing components on a timely basis. Our inability
to obtain components in required quantities or of acceptable quality could
result in significant delays or reductions tin product shipments. This would
materially and adversely affect our operating results.

Rising Energy Costs In California May Result In Increased Operating Expenses And
Reduced Net Income.

California is currently experiencing an energy crisis. As a result, energy costs
in California, including natural gas and electricity, may rise significantly
over the next several months relative to the rest of the United States. Because
we maintain one of our manufacturing facilities in Southern California, our
operating expenses with respect to that facility may increase if this trend
continues. If we cannot pass along these costs to our customers, our margins
will suffer and our net income could decrease.

Our Future Growth Could Be Harmed If The Commercial Adoption of 300mm Wafer
Technology Continues To Progress Slowly Or Is Not Adopted By The Industry.

Our future growth relies in part on the adoption of new systems and technologies
to automate the processing of 300mm wafers. However, the industry transition
from the current, widely used 200mm manufacturing technology to 300mm
manufacturing technology is occurring more slowly than expected. A significant
delay in the adoption of 300mm manufacturing technology, or the failure of the
industry to adopt 300mm manufacturing technology, could significantly reduce our
opportunities for future growth. Moreover, continued delay in transition to
300mm technology could permit our competitors to introduce competing or superior
300mm products are more competitive prices. As a result of these factors,
competition for 300mm orders could become vigorous and could harm our results of
operations.
29

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

Our Recent Rapid Growth Is Straining Our Operations And Requiring Us To Incur
Costs To Upgrade Our Infrastructure.

During the last calendar year and through March 31, 2001, we had experienced
extremely rapid growth in our operations, the number of our employees, our
product offerings and the geographic area of our operations. Our growth has
placed a significant strain on our management, operations and financial systems.
Our future operating results will be dependent in part on our ability to
continue to implement and improve our operating and financial controls and
management information systems. If we fail to manage our growth effectively, our
financial condition, results of operations and business could be harmed.

We May Be Unable To Recruit And Retain Necessary Personnel Because Of Intense
Competition For Highly Skilled Personnel.

We need to retain a substantial number of employees with technical backgrounds
for both our hardware and software engineering and support staffs. The market
for these employees is intensively competitive, and we have occasionally
experienced delays in hiring these personnel. Due to the cyclical nature of the
demand for our products and the current downturn in the semiconductor market, we
recently reduced our workforce by approximately 4% as a cost reduction measure.
If the semiconductor market experiences an upturn, we may need to rebuild our
workforce. Due to the competitive nature of the labor markets in which we
operate, this type of employment cycle increases our risk of not being able to
retain and recruit key personnel. Our inability to recruit, retain and train
adequate numbers of qualified personnel on a timely basis could adversely affect
our ability to develop, manufacture, install and support our products.

Our Systems Integration Services Business Has Grown Significantly Recently And
Our Poor Execution Of Those Services Could Adversely Impact Our Operating
Results.

The number of projects we are pursuing for our systems integration services
business has grown significantly recently. This business consists of integrating
combinations of our software and hardware products to provide more comprehensive
solutions for our end-user customers. The delivery of these services typically
is complex, requiring that we coordinate personnel with varying technical
backgrounds in performing substantial amounts of services in accordance with
timetables. We are in the early stages of developing this business and we are
subject to the risks attendant to entering a business in which we have limited
direct experience. In addition, our ability to supply these services and
increase our revenues is limited by our ability to retain, hire and train
systems integration personnel. We believe that there is significant competition
for these personnel with the advanced skills and technical knowledge that we
need. Some of our competitors may have greater resources to hire personnel with
that skill and knowledge. Our operating margins could be adversely impacted if
we do not effectively hire and train additional personnel or deliver systems
integration services to our customers on a satisfactory and timely basis
consistent with our budgets.

Changes In Accounting Standards And Rules Could Adversely Affect The Time Of
When We Recognize Revenue.

In December 1999, the Securities and Exchange Commission issued Staff Accounting
Bulletin No. 101, or SAB 101, "Revenue Recognition in Financial Statements". SAB
101 provides guidance on applying generally accepted accounting principles to
revenue recognition issues in financial statements. While we have not fully
assessed the impact on us of the adoption of SAB 101, it may require a portion
of our quarterly revenues to be deferred. Any change in our revenue recognition
policy resulting from the implementation of SAB 101 would be reported as a
change in accounting principle in the quarter in which we implemented SAB 101,
with a cumulative adjustment that quarter to reflect the effect of the change.
As a result, while SAB 101 would not affect the fundamental aspects of our
operations as measured by our shipments and cash flows, implementation of SAB
101 could have an adverse effect on our reported results of operations in the
quarter that SAB 101 is implemented.
30

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

RISK FACTORS RELATING TO OUR ACQUISITIONS

Our Business Could Be Harmed If We Fail To Adequately Integrate The Operations
Of Our Acquisitions.

Our management must devote substantial time and resources to the integration of
the operations of our acquired businesses with our core business and with each
other. If we fail to accomplish this integration efficiently, we may not realize
the anticipated benefits of our acquisitions. The process of integrating supply
and distribution channels, research and development initiatives, computer and
accounting system and other aspects of the operation of our acquired business,
presents a significant challenge to our management. This is compounded by the
challenge of simultaneously managing a larger entity. We have completed a number
of acquisitions in a short period of time. These business have operations and
personnel located in Asia, Europe and the United States and present a number of
additional difficulties of integration, including:

- - assimilating products and designs into integrated solutions;

- - informing customers, suppliers and distributors of the effects of the
acquisitions and integrating them into our overall operations;

- - integrating personnel with disparate business backgrounds and cultures

- - defining and executing a comprehensive product strategy;

- - managing geographically remote unites;

- - managing the risks of entering markets or types of businesses in which we
have limited or no direct experience; and

- - minimizing the loss of key employees of the acquired businesses.

If we delay the integration or fail to integrate an acquired business or
experience other unforeseen difficulties, the integration process may require a
disproportionate amount of our management's attention and financial and other
resources. Our failure to adequately address these difficulties could harm our
business and financial results.

Our Business May Be Harmed By Acquisitions We Complete In The Future.

We plan to continue to pursue additional acquisitions of related businesses. Our
identification of suitable acquisition candidates involves risks inherent in
assessing the values, strengths, weaknesses, risks and profitability of
acquisition candidates, including the effects of the possible acquisition on our
business, diversion of our management's attention and risks associated with
unanticipated problems or latent liabilities. If we are successful in pursuing
future acquisitions, we will be required to expend significant funds, incur
additional debt or issue additional securities, which may negatively affect our
results of operations and be dilutive to our stockholders. If we spend
significant funds or incur additional debt, our ability to obtain financing for
working capital or other purposes could decline and we may be more vulnerable to
economic downturns and competitive pressures. We cannot guarantee that we will
be able to finance additional acquisitions or that we will realize any
anticipated benefits from acquisitions that we complete. Should we successfully
acquire another business, the process of integrating acquired operations into
our existing operations may result in unforeseen operating difficulties and may
require significant financial resources that would otherwise be available for
the ongoing development or expansion of our existing business.
31

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

RISK FACTORS RELATING TO OUR COMMON STOCK

Our Operating Results Fluctuate Significantly, Which Could Negatively Impact Our
Business And Our Stock Price.

Our margins, revenues and other operating results can fluctuate significantly
from quarter to quarter depending upon a variety of factors, including:

- - the level of demand for semiconductors in general;

- - cycles in the market for semiconductor manufacturing equipment and
automation software;

- - our ability to manufacture, test and deliver products in a timely and
cost-effective manner;

- - our success in winning competitions for orders;

- - the timing of our new product announcements and releases and those of our
competitors;

- - the mix of products we sell;

- - competitive pricing pressures; and

- - the level of automation required in fab extensions, upgrades and
new facilities.

We entered the factory automation software business in fiscal 1999. We believe a
substantial portion of our revenues from this business will be dependent on
achieving project milestones. As a result, our revenue from this business will
be subject to fluctuations depending upon a number of factors, including whether
we can achieve project milestones on a timely basis, if at all, as well as the
timing and size of projects.

Our Stock Price Is Volatile.

The market price of our common stock has fluctuated widely. For example, between
April 2, 2001 and April 30, 2001, the closing price of our common stock rose
from approximately $36.69 to $62.61 per share and between July 17, 2000 and
August 10, 2000, the price of our common stock dropped from approximately $68.00
to $35.38 per share. Consequently, the current market price of our common stock
may not be indicative of future market prices, and we may be unable to sustain
or increase the value of an investment in our common stock. Factors affecting
our stock price may include:

- - variations in operating results from quarter to quarter;

- - changes in earnings estimates by analysts or our failure to meet analysts'
expectations;

- - changes in the market price per share of our public company customers;

- - market conditions in the industry;

- - general economic conditions;

- - low trading volume of our common stock;

- - the number of firms making a market in our common stock.
32

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

In addition, the stock market has recently experienced extreme price and volume
fluctuations. These fluctuations have particularly affected the market prices of
the securities of high technology companies like us. These market fluctuations
could adversely affect the market price of our common stock.

Because A Limited Number of Stockholders, Including A Member Of Our Management
Team, Own A Substantial Number Of Our Shares And Are Parties To Voting
Agreements, Decisions Made By Them May Be Detrimental To Your Interests.

By virtue of their stock ownership and voting agreements, Robert J. Therrien,
our president and chief executive officer, Jenoptik AG and Daifuku America
Corporation have the power to significantly influence our affairs and are able
to influence the outcome of matters required to be submitted to stockholders for
approval, including the election of our directors, amendments to our certificate
of incorporation, mergers, sales of assets and other acquisitions or sales. We
cannot assure you that these stockholders will not exercise their influence over
us in a manner detrimental to your interests. As of May 9, 2001, Mr. Therrien
holds approximately 5.8% of our common stock, M+W Zander Holding GmbH, a
subsidiary of Jenoptik AG, holds approximately 4.5% of our common stock and
Daifuku America Corporation, the U.S. affiliate of Daifuku Co. Ltd. of Japan,
holds approximately 1.6% of our common stock. Collectively, these stockholders
hold approximately 11.9% of our outstanding common stock.

On September 30, 1999 we entered into a stockholders agreement with Mr.
Therrien, M+W Zander Holding GmbH and Jenoptik AG. This agreement was amended on
October 16, 2000. Under the amended agreement M+W Zander Holding GmbH agreed to
vote all of its shares on all matters in accordance with the recommendation of a
majority of our board of directors.

On January 6, 2000, in connection with our acquisition of Auto-Soft Corporation
and AutoSimulations, Inc. from Daifuku America Corporation, we entered into a
stockholders agreement with Daifuku America Corporation and Daifuku Co., Ltd.
Under the stockholders agreement, Daifuku agreed to vote all of its shares of
our common stock at each meeting of our stockholders in accordance with the
recommendation of our board of directors.

Provisions Of Our Certificate Of Incorporation, Bylaws And Contracts May
Discourage Takeover Offers And May Limit The Price Investors Would Be Willing To
Pay For Our Common Stock.

Our certificate of incorporation and bylaws contain provisions that may make an
acquisition of us more difficult and discourage changes in our management. These
provisions could limit the price that certain investors might be willing to pay
in the future for shares of our common stock. In addition, we have adopted a
rights plan. In many potential takeover situations, rights issued under the plan
become exercisable to purchase our common stock at a price substantially
discounted from the then applicable market price of our common stock. Because of
its possible dilutive effect to a potential acquirer, the rights plan would
generally discourage third parties from proposing a merger with or initiating a
tender offer for us that is not approved by our board of directors. Accordingly,
the rights plan could have an adverse impact of our stockholders who might want
to vote in favor of the merger or participate in the tender offer. In addition,
shares of our preferred stock may be issued upon terms the board of directors
deems appropriate without stockholder approval. Our ability to issue preferred
stock in such a manner could enable our board of directors to prevent changes in
our management or control. Finally, upon a change of control of us, we may be
required to purchase the notes at a price equal to 100% of the principal
outstanding amount thereof, plus accrued and unpaid interest, if any, to the
date of the purchase of the notes. Such a repurchase of the notes would
represent a substantial expense; accordingly, the repayment of the notes upon a
change of control of us could discourage third parties from proposing a merger
with, initiating a tender offer for or otherwise attempting to gain control of
us.
33

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

RISK FACTORS RELATING TO THE NOTES

The Notes Are Subordinated.

The notes are unsecured and subordinated in right of payment to all of
our existing and future senior indebtedness. The indenture defines senior
indebtedness as all of our indebtedness other than any indebtedness that
expressly states that it is subordinated to the notes. The terms of the notes do
not limit the amount of additional indebtedness, including secured indebtedness,
that we can create, incur, assume or guarantee. In the event of our bankruptcy,
liquidation or reorganization or upon acceleration of the notes due to an event
of default under the indenture and in certain other events, our assets will be
available to pay obligations on the notes only after all senior indebtedness has
been paid. In addition, the subordination provisions of the indenture provide
that payments with respect to the notes will be blocked in the event of a
payment default on senior indebtedness and may be blocked for up to 179 days
each year in the event of certain non-payment defaults on senior indebtedness.
As a result, there may be insufficient assets remaining to pay amounts due on
any or all of the outstanding notes. In addition, under the subordination
provisions of the indenture, payments that would otherwise be made to holders of
the notes will instead be paid to holders of senior indebtedness under certain
circumstances. As a result of these provisions, our other creditors (including
trade creditors) that are not holders of senior indebtedness may recover more,
ratably, than the holders of the notes. The notes are structurally subordinated
to all liabilities, including trade payables, of our subsidiaries. The indenture
governing the notes does not limit our or our subsidiaries' ability to incur
debt, including senior indebtedness. Any right of ours to receive assets of any
subsidiary upon its liquidation or reorganization, and the consequent right of
the holders of the notes to participate in the assets will be subject to the
claims of that subsidiary's creditors. If we or our subsidiaries were to incur
additional debt or liabilities, our ability to pay our obligations on the notes
could be adversely affected.

We May Be Unable To Meet the Redemption Requirements Upon A Change In Control.

Upon a change in control, the holders of our notes may require us to
purchase all or a portion of the notes. If a change in control were to occur, we
may not have enough funds to pay the purchase price for all tendered notes.
Future agreements relating to our indebtedness might contain provisions that
prohibit the repurchase of the notes upon a change in control. If a change in
control occurs at a time when we are prohibited from purchasing the notes, we
could seek the consent of our lenders to purchase the notes or could attempt to
refinance this debt. If we do not obtain consent, we could not purchase the
notes. Our failure to purchase tendered notes would constitute an event of
default under the indenture. In such circumstances, or if a change in control
would constitute an event of default under our senior indebtedness, the
subordination provisions of the indenture would restrict payments to the holders
of the notes. The term "change in control" is limited to certain specified
transactions and may not include other events that might harm our financial
condition. Our obligation to offer to purchase the notes upon a change in
control would not necessarily afford the note holders protection in the event of
a highly leveraged transaction, reorganization, merger or similar transaction
involving us.

A Public Market May Not Develop for the Notes.

Since the issuance of the notes, the initial purchasers have made a
market in the notes. However, the initial purchasers are not obligated to make a
market and may discontinue this market making activity at any time without
notice. In addition, market-making activity by the initial purchasers will be
subject to the limits imposed by the Securities Act and the Exchange Act. As a
result, we cannot assure the holders of the notes that any market for the notes
will develop or, if one does develop, that it will be maintained. If an active
market for the notes fails to develop or be sustained, the trading price of the
notes could decline significantly.
34

BROOKS AUTOMATION, INC.
MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION
AND RESULTS OF OPERATIONS - Continued

Because of Our Substantial Indebtedness, We May be Unable to Adjust our Strategy
to Meet Changing Conditions in the Future.

As of June 30, 2001, we had long-term debt obligations of approximately
$175 million due to the issuance of the 4.75% Convertible Subordinated Notes due
2008. This indebtedness could have several important consequences for our future
operations. Specifically,

- - we may be unable to obtain additional financing for capital
expenditures, acquisitions or general corporate purposes;

- - we may be unable to withstand changing competitive pressures, economic
conditions or government regulations; and

- - we may be unable to otherwise take advantage of significant business
opportunities that may arise.
35

BROOKS AUTOMATION, INC.


Item 3. QUANTITATIVE AND QUALITATIVE DISCLOSURE ABOUT MARKET RISK

INTEREST RATE EXPOSURE

Based on Brooks' overall interest exposure at June 30, 2001, including all
interest rate-sensitive instruments, a near-term change in interest rates within
a 95% confidence level based on historical interest rate movements would not
materially affect the consolidated results of operations or financial position.

CURRENCY RATE EXPOSURE

Brooks' foreign revenues are generally denominated in United States dollars.
Accordingly, foreign currency fluctuations have not had a significant impact on
the comparison of the results of operations for the periods presented. The costs
and expenses of Brooks' international subsidiaries are generally denominated in
currencies other than the United States dollar. However, since the functional
currency of Brooks' international subsidiaries is the local currency, foreign
currency translation adjustments do not impact operating results, but instead
are reflected as a component of stockholders' equity under the caption
"Accumulated other comprehensive income (loss)". To the extent Brooks expands
its international operations or changes its pricing practices to denominate
prices in foreign currencies, Brooks will be exposed to increased risk of
currency fluctuation.
36

BROOKS AUTOMATION, INC.

PART II. OTHER INFORMATION


Item 6. EXHIBITS AND REPORTS ON FORM 8-K

(a) The following exhibits are included herein:

<TABLE>
<CAPTION>

Exhibit No. Description

----------- -----------
<S> <C>
4.1 Form of Global Note for 4.75% Convertible Subordinated Notes of the Company due in Principal
Amount of $175,000,000 dated as of May 23, 2001*

4.2 Registration Rights Agreement dated May 23, 2001 Among the Company and Credit Suisse
First Boston Corporation and SG Cowen Securities Corporation (as representatives of several
purchasers)*

4.3 Indenture dates as of May 23, 2001 between the Company and State Street Bank and Trust Company
(as Trustee)*

</TABLE>

* Incorporated by Reference to our current report on Form 8-K
filed on May 29, 2001.

(b) The following reports on Form 8-K were filed during the quarterly
period ended June 30, 2001:

(1) Current Report on Form 8-K filed on May 29, 2001, relating to the
completion of the sale of the Company's private offering of $175.0
million aggregate principal amount of its 4.75% subordinated
convertible notes.

(2) Current Report on Form 8-K filed on May 24, 2001, relating to the
agreement and completion of the sale of the Company's private offering
of $175.0 million aggregate principal amount of its 4.75% subordinated
convertible notes.

(3) Current Report on Form 8-K filed on May 15, 2001, relating to the
announcement of the Company's intention to commence a private offering
of its convertible subordinated notes.
37

SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, the
Registrant has duly caused this report to be signed on its behalf by the
undersigned, thereunto duly authorized.

BROOKS AUTOMATION, INC.







DATE: August 13, 2001 /s/ Robert J. Therrien
-----------------------------------
Robert J. Therrien
Director and President
(Principal Executive Officer)







DATE: August 13, 2001 /s/ Ellen B. Richstone
-----------------------------------
Ellen B. Richstone
Senior Vice President of Finance and
Administration and Chief Financial Officer
(Principal Financial Officer)
38

EXHIBIT INDEX

<TABLE>
<CAPTION>

Exhibit No. Description

- ------------ ------------
<S> <C>

4.1 Form of Global Note for 4.75% Convertible Subordinated Notes of the Company due in Principal Amount of
$175,000,000 dated as of May 23, 2001*

4.3 Registration Rights Agreement dated May 23, 2001 Among the Company and Credit Suisse First Boston Corporation and
SG Cowen Securities Corporation (as representatives of several purchasers)*

4.3 Indenture dates as of May 23, 2001 between the Company and State Street Bank and Trust Company (as Trustee)*

</TABLE>

* Incorporated by Reference to our current report on Form 8-K filed on
May 29, 2001.